morphomapping.MM.cell_plot

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morphomapping.MM.cell_plot#

MM.cell_plot(cluster_column, top_clusters, palette, ID, x_label, y_label, png, svg, name)#

Create plot with highlighted IDs.Save as png or svg.

Parameters:

  • cluster_column – column with cluster numbers

  • top_clusters (int) – number of top clusters that should be highlighted

  • palette – colours for top clusters

  • ID – IDs of cells of interest

  • x_label – label for x-axis

  • y_label – label for y-axis

  • png (bool) – saved as .png if True

  • svg (bool) – saved as.svg if True

  • name (str) – name of file

Return type:

None

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